Creality bases are notoriously NOT flat although I’ve heard their quality has improved over the years. I have one of the 1st-gen Ender 3 Pro machines with a terrible dip in the aluminum base. One nice thing about a thicker bed material is that you can use discs of aluminum foil the shim the base. I started with a glass bed and 13 layers of foil to get the glass reasonably flat. I have since moved to 3mm G10 with a PEI sticker which is working pretty well (in case you want to try PEI again). I found some scrap G10 material on ebay and chopped it with a table saw, sanded all the edges, then got a PEI sheet that was 10mm wider than my bed to allow for some slop. Putting down the stickers is a lot easier if you have someone helping you. Then trim the overhang and you’re ready to go.
Hmm I’m out of ideas then, sorry. Still wouldn’t hurt to do a single-layer test print (there are various models that put squares all around the bed) just to see how that’s looking. If the issue had been confined to one side or one corner it might have been a mechanical issue, but random areas makes it a lot harder to figure out.
If I remember right, jerk settings should be rather small, like single-digits, but I think calibrating your e-steps will go a lot further for cleaning up the prints.
One other step (and of course I cannot remember what this is called) is related to calibrating the filament ‘pressure’ along each path. It takes a bit of work to set up but the goal is to create a profile so you get a perfectly consistent amount of filament extruded through the entire length of a path, which compensates for excess amounts at the beginning and end of each path, or too little extrusion through the middle. You might even have to compile your own firmware to enable it if there’s not an option in Marlin to turn it on from the software (I was compiling my own anyway for a DIY direct-drive extruder), but it really does make a difference and it’s a set-and-forget thing that you only really need to do once.